miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|164051358|gb|EB659142.1|EB659142 TTTTTTTTTTTTTTTTTTAAATAAGCACCATTACTATTCCATCAGATAACTTAGTTCCCATCATACAGCAAGAACACGAT
CAGAAAGCCCAACATCTAACTACACAATCCACTCCACCCAAATTCCTGGAACTAGCACGACTACCAGGAGCAACAGGCCA
CACGAGCAGACGGGATCATCTAGGGATCATCTACGCGGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGT
GCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGTCTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAG
CGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGA
GGAGATGCCGATGTCGGGGTGGACCTGCTTGATCACCTTGAAGATGTAGATCTTGTAGGTCTCCACCGACTTCTTCCCCT
TCTTCCTCCCCCTCTTGGACTCGCCGCCCTCCTTGCCGGCGGTCTTCCCCGCGGGGAGCCGCTTCTCGGCCTTGGGCTTC
TTCCCCGCCGGAGCCTTCTCCGCCTTCTCCGTCGCGGGCTCCTCCTCCGCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGC
CTTGGGGGCCATCGACTCCCTCGGGGTTGCTGTGGCTGGCTCGG




Most similar to sp|Q94JJ4|H2B4_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q94JJ4|H2B4_ORYSJ Histone H2B.4 OS=Oryza sativa subsp. japonica
           GN=H2B.4 PE=3 SV=1
          Length = 153

 Score =  179 bits (455), Expect = 1e-44
 Identities = 96/116 (82%), Positives = 98/116 (84%)
 Frame = -3

Query: 541 RLPAGKTAXXXXXXXXXXXXXXXXSVETYKIYIFKVIKQVHPDIGISSKAMSIMNSFIND 362
           RLPAGK                  SVETYKIYIFKV+KQVHPDIGISSKAMSIMNSFIND
Sbjct: 38  RLPAGKAEKGSGEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFIND 97

Query: 361 IFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 194
           IFEKLAGE+AKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA
Sbjct: 98  IFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 153